Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_08060 | Not Available | Negative | 1999475 - 1999699 | 8505.38 |
| excinuclease abc subunit uvrc | DW869_08065 | Not Available | Positive | 1999702 - 2001522 | 69878.8 |
| d-tyrosyl-trna(tyr) deacylase | DW869_08070 | Not Available | Positive | 2001680 - 2002132 | 16476.0 |
| pyrophosphatase | DW869_08075 | Not Available | Positive | 2002132 - 2002452 | 12338.7 |
| deoxyribose-phosphate aldolase | DW869_08080 | Not Available | Positive | 2002459 - 2003406 | 34798.2 |
| polyprenyl synthetase family protein | DW869_08085 | Not Available | Negative | 2003597 - 2004571 | 36285.5 |
| dna polymerase i | DW869_08090 | Not Available | Positive | 2004663 - 2007578 | 109365.0 |
| hypothetical protein | DW869_08095 | Not Available | Positive | 2007649 - 2007861 | 8063.96 |
| duf3836 domain-containing protein | DW869_08100 | Not Available | Positive | 2007888 - 2008274 | 15047.1 |
| redox-regulated atpase ychf | DW869_08105 | Not Available | Positive | 2008475 - 2009578 | 40801.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

