Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW869_08010 | Not Available | Negative | 1988363 - 1989301 | 36218.7 |
| murein l,d-transpeptidase | DW869_08015 | Not Available | Positive | 1989509 - 1990528 | 38942.9 |
| hypothetical protein | DW869_08020 | Not Available | Positive | 1990531 - 1991328 | 29134.1 |
| dna damage-inducible protein d | DW869_08025 | Not Available | Negative | 1991352 - 1992128 | 29239.0 |
| hypothetical protein | DW869_08030 | Not Available | Positive | 1992691 - 1993923 | 44187.1 |
| endoribonuclease ybey | DW869_08035 | Not Available | Positive | 1993968 - 1994384 | 15838.9 |
| hypothetical protein | DW869_08040 | Not Available | Positive | 1994611 - 1995144 | 20260.5 |
| flotillin family protein | DW869_08045 | Not Available | Positive | 1995170 - 1996870 | 62444.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DW869_08050 | Not Available | Positive | 1997017 - 1998888 | 69615.1 |
| adenine phosphoribosyltransferase | DW869_08055 | Not Available | Positive | 1998948 - 1999472 | 19189.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

