Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW869_07855 | Not Available | Positive | 1951280 - 1952563 | 50282.2 |
| duf1016 family protein | DW869_07860 | Not Available | Positive | 1952627 - 1953922 | 48990.5 |
| hypothetical protein | DW869_07865 | Not Available | Positive | 1953931 - 1954974 | 41729.4 |
| duf3853 family protein | DW869_07870 | Not Available | Positive | 1955199 - 1955507 | 11401.1 |
| mobilization protein | DW869_07875 | Not Available | Positive | 1955522 - 1956509 | 37564.1 |
| pp_01544 | DW869_07880 | Not Available | Negative | 1956806 - 1957723 | Not Available |
| acyl-coa thioesterase | DW869_07885 | Not Available | Positive | 1957782 - 1958189 | 15657.8 |
| dna-protecting protein dpra | DW869_07890 | Not Available | Positive | 1958186 - 1959301 | 40930.4 |
| glycoside hydrolase family 29 | DW869_07895 | Not Available | Negative | 1959382 - 1961265 | 70587.9 |
| duf3575 domain-containing protein | DW869_07905 | Not Available | Positive | 1961860 - 1963227 | 52119.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

