Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capa family protein | DW869_07705 | Not Available | Negative | 1906027 - 1907100 | 40911.6 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DW869_07710 | Not Available | Negative | 1908037 - 1908918 | 31535.7 |
| signal recognition particle protein | DW869_07715 | Not Available | Negative | 1909032 - 1910354 | 48854.7 |
| mate family efflux transporter | DW869_07720 | Not Available | Negative | 1910453 - 1911775 | 48730.4 |
| hypothetical protein | DW869_07725 | Not Available | Positive | 1912114 - 1913469 | 48796.8 |
| rna polymerase sigma-70 factor | DW869_07730 | Not Available | Negative | 1913528 - 1914088 | 22001.6 |
| duf1624 domain-containing protein | DW869_07735 | Not Available | Negative | 1914113 - 1915204 | 40470.6 |
| beta-hexosaminidase | DW869_07740 | Not Available | Positive | 1915405 - 1917828 | 91049.5 |
| gamma-carboxymuconolactone decarboxylase | DW869_07745 | Not Available | Positive | 1918062 - 1918892 | 31071.8 |
| hypothetical protein | DW869_07750 | Not Available | Positive | 1919027 - 1920241 | 45647.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

