Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW869_07650 | Not Available | Negative | 1885322 - 1888321 | 112088.0 |
| hybrid sensor histidine kinase/response regulator | DW869_07655 | Not Available | Negative | 1888637 - 1892587 | 152107.0 |
| galactose mutarotase | DW869_07660 | Not Available | Negative | 1892770 - 1893903 | 42581.3 |
| beta-galactosidase | DW869_07665 | Not Available | Negative | 1893909 - 1895723 | 69360.5 |
| ahpc/tsa family protein | DW869_07670 | Not Available | Negative | 1896340 - 1897518 | 44862.0 |
| tlpa family protein disulfide reductase | DW869_07675 | Not Available | Negative | 1897526 - 1898893 | 51271.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_07680 | Not Available | Negative | 1899009 - 1900589 | 60039.6 |
| fecr family protein | DW869_07690 | Not Available | Negative | 1904078 - 1905160 | 41467.0 |
| sigma-70 family rna polymerase sigma factor | DW869_07695 | Not Available | Negative | 1905233 - 1905799 | 22575.3 |
| Trna-his | Not Available | Not Available | Positive | 1905875 - 1905951 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

