Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | DW869_07600 | Not Available | Positive | 1871482 - 1872516 | 38981.6 |
| mfs transporter | DW869_07605 | Not Available | Positive | 1872644 - 1873840 | 43918.7 |
| hypothetical protein | DW869_07610 | Not Available | Negative | 1873837 - 1874979 | 43009.4 |
| 4-amino-4-deoxychorismate lyase | DW869_07615 | Not Available | Negative | 1875069 - 1875662 | 22723.3 |
| aminodeoxychorismate synthase component i | DW869_07620 | Not Available | Negative | 1875646 - 1876629 | 37481.9 |
| hypothetical protein | DW869_07625 | Not Available | Negative | 1876971 - 1879004 | 77627.4 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW869_07630 | Not Available | Negative | 1879024 - 1880025 | 37472.1 |
| 1,4-beta-xylanase | DW869_07635 | Not Available | Negative | 1880022 - 1880978 | 36526.4 |
| glycoside hydrolase | DW869_07640 | Not Available | Negative | 1880998 - 1883631 | 101166.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_07645 | Not Available | Negative | 1883711 - 1885300 | 61771.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

