Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DW869_07550 | Not Available | Negative | 1862398 - 1862853 | 17765.2 |
| 7-cyano-7-deazaguanine synthase quec | DW869_07555 | Not Available | Negative | 1863072 - 1863743 | 24810.8 |
| vut family protein | DW869_07560 | Not Available | Negative | 1863864 - 1864550 | 25111.7 |
| ornithine--oxo-acid transaminase | DW869_07565 | Not Available | Negative | 1864839 - 1866074 | 45621.9 |
| amidinotransferase | DW869_07570 | Not Available | Negative | 1866089 - 1867000 | 34249.8 |
| amidinotransferase | DW869_07575 | Not Available | Negative | 1867023 - 1867943 | 35512.7 |
| endonuclease iii | DW869_07580 | Not Available | Positive | 1868061 - 1868705 | 24101.6 |
| mbl fold metallo-hydrolase | DW869_07585 | Not Available | Negative | 1868700 - 1869476 | 29140.4 |
| udp-n-acetylmuramate dehydrogenase | DW869_07590 | Not Available | Negative | 1869485 - 1870498 | 37603.1 |
| duf4348 domain-containing protein | DW869_07595 | Not Available | Negative | 1870510 - 1871370 | 33536.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

