Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | DW869_07345 | Not Available | Negative | 1812276 - 1813691 | 53275.8 |
| rhamnogalacturonan lyase | DW869_07350 | Not Available | Negative | 1813704 - 1815611 | 70719.5 |
| glycoside hydrolase family 28 protein | DW869_07355 | Not Available | Negative | 1815608 - 1816996 | 52063.7 |
| hypothetical protein | DW869_07360 | Not Available | Negative | 1817060 - 1819411 | 89453.0 |
| isas1 family transposase | DW869_07370 | Not Available | Negative | 1820489 - 1820682 | 7174.5 |
| is66 family transposase | DW869_07375 | Not Available | Negative | 1820683 - 1821813 | 43932.1 |
| hypothetical protein | DW869_07380 | Not Available | Negative | 1821886 - 1822221 | 13408.5 |
| hypothetical protein | DW869_07385 | Not Available | Positive | 1822362 - 1822586 | 8657.85 |
| polysaccharide biosynthesis protein | DW869_07390 | Not Available | Negative | 1822974 - 1824500 | 57686.1 |
| aldo/keto reductase | DW869_07395 | Not Available | Negative | 1824632 - 1825552 | 35430.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

