Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-glucosidase | DW869_07245 | Not Available | Negative | 1783979 - 1785913 | 73702.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_07250 | Not Available | Negative | 1786065 - 1787891 | 68526.6 |
| tonb-dependent receptor | DW869_07255 | Not Available | Negative | 1787902 - 1790979 | 113749.0 |
| rna polymerase sigma-70 factor | DW869_07260 | Not Available | Negative | 1791105 - 1791650 | 21359.8 |
| glucuronyl hydrolase | DW869_07265 | Not Available | Negative | 1791675 - 1792901 | 46537.6 |
| helix-turn-helix domain-containing protein | DW869_07270 | Not Available | Negative | 1793137 - 1795941 | 106145.0 |
| Trna-met | Not Available | Not Available | Positive | 1796115 - 1796188 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 1796247 - 1796323 | Not Available |
| hypothetical protein | DW869_07285 | Not Available | Positive | 1796527 - 1796913 | 15266.2 |
| yjgp/yjgq family permease | DW869_07290 | Not Available | Positive | 1796997 - 1798895 | 72527.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

