Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_07195 | Not Available | Negative | 1761617 - 1762537 | 35418.4 |
| endo-polygalacturonase | DW869_07200 | Not Available | Negative | 1762728 - 1764164 | 53741.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_07205 | Not Available | Negative | 1764364 - 1766391 | 75440.1 |
| tonb-dependent receptor | DW869_07210 | Not Available | Negative | 1766414 - 1769740 | 122473.0 |
| sigma-70 family rna polymerase sigma factor | DW869_07215 | Not Available | Negative | 1769784 - 1770299 | 20705.7 |
| helix-turn-helix domain-containing protein | DW869_07220 | Not Available | Negative | 1770500 - 1773313 | 106654.0 |
| six-hairpin glycosidase | DW869_07225 | Not Available | Negative | 1773472 - 1776210 | 102960.0 |
| hypothetical protein | DW869_07230 | Not Available | Negative | 1776300 - 1777901 | 60316.1 |
| beta-glucosidase | DW869_07235 | Not Available | Positive | 1778037 - 1780403 | 87829.0 |
| glycoside hydrolase | DW869_07240 | Not Available | Negative | 1780557 - 1783982 | 130581.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

