Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | DW869_06475 | Not Available | Positive | 1582762 - 1583607 | 31477.6 |
| insulinase family protein | DW869_06480 | Not Available | Positive | 1583620 - 1584864 | 47349.5 |
| mate family efflux transporter | DW869_06485 | Not Available | Positive | 1584958 - 1586268 | 48593.3 |
| response regulator | DW869_06490 | Not Available | Positive | 1586282 - 1588849 | 96930.3 |
| sigma-54-dependent fis family transcriptional regulator | DW869_06495 | Not Available | Positive | 1588951 - 1590333 | 51219.5 |
| hypothetical protein | DW869_06500 | Not Available | Positive | 1590618 - 1590923 | 10798.8 |
| rna pseudouridine synthase | DW869_06505 | Not Available | Negative | 1590988 - 1591659 | 25519.9 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DW869_06510 | Not Available | Negative | 1591661 - 1592407 | 25964.4 |
| tetr/acrr family transcriptional regulator | DW869_06515 | Not Available | Negative | 1592438 - 1593037 | 22662.3 |
| Trna-met | Not Available | Not Available | Positive | 1593269 - 1593344 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

