Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | DW869_06420 | Not Available | Negative | 1563108 - 1563953 | 31469.7 |
| deor/glpr transcriptional regulator | DW869_06425 | Not Available | Negative | 1564295 - 1565050 | 27350.1 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | DW869_06430 | Not Available | Negative | 1565062 - 1565676 | 22225.8 |
| duf5060 domain-containing protein | DW869_06435 | Not Available | Negative | 1565798 - 1567402 | 61912.9 |
| hybrid sensor histidine kinase/response regulator | DW869_06440 | Not Available | Negative | 1567567 - 1571889 | 165130.0 |
| hypothetical protein | DW869_06445 | Not Available | Negative | 1572103 - 1572783 | 24715.3 |
| arac family transcriptional regulator | DW869_06450 | Not Available | Positive | 1572995 - 1573897 | 35311.8 |
| nucleotidyltransferase | DW869_06455 | Not Available | Negative | 1574002 - 1574913 | 33769.1 |
| hypothetical protein | DW869_06460 | Not Available | Negative | 1575048 - 1577405 | 89001.5 |
| hypothetical protein | DW869_06465 | Not Available | Negative | 1577402 - 1582051 | 171843.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

