Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-c crispr-associated protein cas8c/csd1 | DW869_06370 | Not Available | Negative | 1549900 - 1551615 | 65100.2 |
| type i-c crispr-associated protein cas5 | DW869_06375 | Not Available | Negative | 1551612 - 1552292 | 26800.2 |
| hypothetical protein | DW869_06380 | Not Available | Negative | 1552294 - 1553154 | 33244.5 |
| crispr-associated helicase/endonuclease cas3 | DW869_06385 | Not Available | Negative | 1553165 - 1555390 | 84283.9 |
| histidine--trna ligase | DW869_06390 | Not Available | Negative | 1555792 - 1557156 | 50299.7 |
| sugar abc transporter substrate-binding protein | DW869_06395 | Not Available | Negative | 1557315 - 1558163 | 31247.0 |
| multidrug dmt transporter permease | DW869_06400 | Not Available | Negative | 1558171 - 1559187 | 35979.8 |
| fucose isomerase | DW869_06405 | Not Available | Negative | 1559200 - 1560624 | 52346.9 |
| glycerol kinase glpk | DW869_06410 | Not Available | Negative | 1560658 - 1562154 | 55207.4 |
| transketolase family protein | DW869_06415 | Not Available | Negative | 1562180 - 1563118 | 33639.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

