Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| co-chaperone groes | DW869_06320 | Not Available | Negative | 1539623 - 1539895 | 9740.92 |
| 4fe-4s dicluster domain-containing protein | DW869_06325 | Not Available | Positive | 1540276 - 1541742 | 54223.4 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DW869_06330 | Not Available | Positive | 1541751 - 1542785 | 38839.6 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DW869_06335 | Not Available | Positive | 1542798 - 1544216 | 53347.0 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DW869_06340 | Not Available | Positive | 1544280 - 1545470 | 43830.5 |
| transposase family protein | DW869_06345 | Not Available | Negative | 1545697 - 1545923 | 8675.5 |
| crispr-associated endonuclease cas2 | DW869_06350 | Not Available | Negative | 1547002 - 1547292 | 11015.4 |
| type i-c crispr-associated endonuclease cas1 | DW869_06355 | Not Available | Negative | 1547302 - 1548324 | 38708.3 |
| crispr-associated protein cas4 | DW869_06360 | Not Available | Negative | 1548321 - 1548986 | 25838.0 |
| type i-c crispr-associated protein cas7/csd2 | DW869_06365 | Not Available | Negative | 1548996 - 1549880 | 32507.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

