Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_06210 | Not Available | Positive | 1521384 - 1521569 | 7426.38 |
| urocanate hydratase | DW869_06215 | Not Available | Positive | 1521831 - 1523828 | 74543.1 |
| formiminotransferase-cyclodeaminase | DW869_06220 | Not Available | Positive | 1523850 - 1523963 | 4348.15 |
| glutamate formimidoyltransferase | DW869_06225 | Not Available | Positive | 1523911 - 1524813 | 33359.4 |
| gxxexxy protein | DW869_06230 | Not Available | Positive | 1524831 - 1525217 | 15150.3 |
| imidazolonepropionase | DW869_06235 | Not Available | Positive | 1525264 - 1526508 | 44903.3 |
| methenyltetrahydrofolate cyclohydrolase | DW869_06240 | Not Available | Positive | 1526529 - 1527152 | 22967.8 |
| histidine ammonia-lyase | DW869_06245 | Not Available | Positive | 1527187 - 1528683 | 55208.0 |
| nudix domain-containing protein | DW869_06250 | Not Available | Positive | 1528802 - 1529302 | 19016.2 |
| hypothetical protein | DW869_06255 | Not Available | Negative | 1530029 - 1530235 | 7690.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

