Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | DW869_06160 | Not Available | Negative | 1510991 - 1512388 | 52018.1 |
| hypothetical protein | DW869_06165 | Not Available | Negative | 1512520 - 1513062 | 19666.0 |
| electron transfer flavoprotein beta subunit/fixa family protein | DW869_06170 | Not Available | Positive | 1513268 - 1514161 | 31873.2 |
| electron transfer flavoprotein subunit alpha/fixb family protein | DW869_06175 | Not Available | Positive | 1514167 - 1515186 | 36698.3 |
| four helix bundle protein | DW869_06180 | Not Available | Positive | 1515222 - 1515602 | 14337.4 |
| acyl-coa dehydrogenase | DW869_06185 | Not Available | Positive | 1515644 - 1517350 | 63864.0 |
| histidine decarboxylase | DW869_06190 | Not Available | Positive | 1517809 - 1518417 | 22182.6 |
| paai family thioesterase | DW869_06195 | Not Available | Negative | 1518497 - 1518907 | 14751.8 |
| duf2027 domain-containing protein | DW869_06200 | Not Available | Negative | 1518935 - 1520023 | 41096.4 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | DW869_06205 | Not Available | Positive | 1520088 - 1521305 | 46273.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

