Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transporter | DW869_06105 | Not Available | Negative | 1491131 - 1492801 | 60144.9 |
| methylmalonyl-coa mutase small subunit | DW869_06110 | Not Available | Positive | 1493087 - 1494997 | 70522.5 |
| methylmalonyl-coa mutase | DW869_06115 | Not Available | Positive | 1495007 - 1497157 | 79111.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_06120 | Not Available | Negative | 1497480 - 1498541 | 39225.2 |
| duf1232 domain-containing protein | DW869_06130 | Not Available | Negative | 1500773 - 1501135 | 13988.2 |
| tonb-dependent receptor | DW869_06135 | Not Available | Negative | 1501280 - 1503604 | 88534.2 |
| sensor histidine kinase | DW869_06140 | Not Available | Positive | 1503760 - 1505256 | 56817.7 |
| mechanosensitive ion channel family protein | DW869_06145 | Not Available | Negative | 1505375 - 1506568 | 45221.0 |
| multidrug efflux rnd transporter permease subunit | DW869_06150 | Not Available | Negative | 1506685 - 1509801 | 112541.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_06155 | Not Available | Negative | 1509806 - 1510936 | 41358.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

