Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-glucose 4,6-dehydratase | DW869_06055 | Not Available | Positive | 1470423 - 1471562 | 43738.0 |
| tonb-dependent receptor | DW869_06060 | Not Available | Positive | 1472032 - 1475124 | 115112.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_06065 | Not Available | Positive | 1475137 - 1476954 | 68245.8 |
| duf4981 domain-containing protein | DW869_06070 | Not Available | Negative | 1477141 - 1480371 | 122512.0 |
| glycoside hydrolase | DW869_06075 | Not Available | Negative | 1480427 - 1482496 | 78010.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_06080 | Not Available | Negative | 1482528 - 1484063 | 58902.3 |
| susc/raga family tonb-linked outer membrane protein | DW869_06085 | Not Available | Negative | 1484084 - 1487500 | 126356.0 |
| duf4974 domain-containing protein | DW869_06090 | Not Available | Negative | 1487645 - 1488631 | 38650.5 |
| rna polymerase sigma-70 factor | DW869_06095 | Not Available | Negative | 1488761 - 1489342 | 22694.6 |
| abc transporter atp-binding protein | DW869_06100 | Not Available | Negative | 1489382 - 1491016 | 61961.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

