Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase domain-containing abc transporter | DW869_06005 | Not Available | Positive | 1460688 - 1462889 | 83543.6 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW869_06010 | Not Available | Positive | 1462938 - 1464083 | 43737.3 |
| hypothetical protein | DW869_06015 | Not Available | Positive | 1464132 - 1464335 | 7562.53 |
| radical sam protein | DW869_06020 | Not Available | Positive | 1464313 - 1465824 | 58154.3 |
| peptidase c39 | DW869_06025 | Not Available | Positive | 1465817 - 1466398 | 23420.5 |
| hypothetical protein | DW869_06030 | Not Available | Negative | 1466364 - 1466987 | 23177.9 |
| hypothetical protein | DW869_06035 | Not Available | Positive | 1467300 - 1467521 | 8449.06 |
| hypothetical protein | DW869_06040 | Not Available | Positive | 1467518 - 1467739 | 8538.35 |
| rna degradosome polyphosphate kinase | DW869_06045 | Not Available | Negative | 1467765 - 1469819 | 80560.6 |
| metallophosphoesterase | DW869_06050 | Not Available | Positive | 1469877 - 1470374 | 18707.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

