Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(46)-n7)-methyltransferase trmb | DW869_05890 | Not Available | Negative | 1437102 - 1437860 | 29773.6 |
| branched-chain amino acid aminotransferase | DW869_05900 | Not Available | Negative | 1438319 - 1439338 | 37876.2 |
| exodeoxyribonuclease vii small subunit | DW869_05905 | Not Available | Negative | 1439519 - 1439722 | 7823.46 |
| exodeoxyribonuclease vii large subunit | DW869_05910 | Not Available | Negative | 1439731 - 1441038 | 49535.8 |
| serine protease | DW869_05915 | Not Available | Negative | 1441038 - 1442411 | 49946.9 |
| mate family efflux transporter | DW869_05920 | Not Available | Positive | 1442533 - 1443903 | 49490.1 |
| cytidylate kinase-like family protein | DW869_05925 | Not Available | Positive | 1443957 - 1444586 | 23564.2 |
| tetratricopeptide repeat protein | DW869_05930 | Not Available | Positive | 1444816 - 1446672 | 72895.5 |
| duf3244 domain-containing protein | DW869_05935 | Not Available | Positive | 1446831 - 1447235 | 14848.9 |
| hypothetical protein | DW869_05940 | Not Available | Positive | 1447379 - 1448305 | 35822.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

