Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate family efflux transporter | DW869_05630 | Not Available | Positive | 1366351 - 1367676 | 48941.7 |
| ump kinase | DW869_05635 | Not Available | Positive | 1367715 - 1368425 | 25575.2 |
| glycoside hydrolase family 88 protein | DW869_05640 | Not Available | Positive | 1368683 - 1369921 | 47229.2 |
| hypothetical protein | DW869_05645 | Not Available | Positive | 1369976 - 1372084 | 79949.1 |
| duf4450 domain-containing protein | DW869_05650 | Not Available | Positive | 1372109 - 1375366 | 121492.0 |
| histidine phosphatase family protein | DW869_05655 | Not Available | Negative | 1375389 - 1375907 | 19475.5 |
| aaa family atpase | DW869_05660 | Not Available | Negative | 1376310 - 1377890 | 61227.0 |
| ribosome-recycling factor | DW869_05665 | Not Available | Positive | 1378129 - 1378689 | 20738.2 |
| ribosome small subunit-dependent gtpase a | DW869_05670 | Not Available | Positive | 1378810 - 1379742 | 35098.8 |
| m20/m25/m40 family metallo-hydrolase | DW869_05675 | Not Available | Positive | 1379756 - 1380775 | 38319.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

