Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | DW869_05530 | Not Available | Positive | 1348810 - 1349571 | 28987.6 |
| class i fructose-bisphosphate aldolase | DW869_05535 | Not Available | Positive | 1349723 - 1350775 | 38081.5 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DW869_05540 | Not Available | Positive | 1350937 - 1352163 | 45926.6 |
| phospholipase | DW869_05545 | Not Available | Positive | 1352168 - 1352587 | 15918.1 |
| metal abc transporter permease | DW869_05550 | Not Available | Positive | 1352640 - 1353491 | 31184.2 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DW869_05555 | Not Available | Positive | 1353475 - 1353903 | 16141.0 |
| hypothetical protein | DW869_05560 | Not Available | Positive | 1353971 - 1354186 | 8138.21 |
| plasmid pria4b orf-3 family protein | DW869_05565 | Not Available | Negative | 1354301 - 1355860 | 61141.4 |
| hypothetical protein | DW869_05570 | Not Available | Negative | 1356040 - 1356375 | 12878.8 |
| thioredoxin | DW869_05575 | Not Available | Negative | 1356411 - 1356725 | 11454.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

