Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-a-disaccharide synthase | DW869_05380 | Not Available | Negative | 1316188 - 1317327 | 43067.6 |
| 5'/3'-nucleotidase sure | DW869_05385 | Not Available | Negative | 1317324 - 1318097 | 28332.7 |
| para family protein | DW869_05390 | Not Available | Positive | 1318355 - 1319122 | 28003.1 |
| parb/repb/spo0j family partition protein | DW869_05395 | Not Available | Positive | 1319126 - 1320022 | 33345.2 |
| hypothetical protein | DW869_05400 | Not Available | Positive | 1320092 - 1320799 | 26895.4 |
| lysm peptidoglycan-binding domain-containing protein | DW869_05405 | Not Available | Positive | 1320804 - 1322066 | 47706.3 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW869_05410 | Not Available | Positive | 1322168 - 1324438 | 86308.0 |
| merr family transcriptional regulator | DW869_05415 | Not Available | Negative | 1324530 - 1324877 | 13742.9 |
| m23 family peptidase | DW869_05420 | Not Available | Negative | 1324911 - 1325879 | 36405.9 |
| alanine--trna ligase | DW869_05425 | Not Available | Positive | 1326019 - 1328637 | 97427.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

