Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-histidine dipeptidase | DW869_05330 | Not Available | Negative | 1304635 - 1306095 | 53173.6 |
| upf0104 family protein | DW869_05335 | Not Available | Negative | 1306092 - 1307096 | 37225.6 |
| ribosomal rna small subunit methyltransferase a | DW869_05340 | Not Available | Positive | 1307195 - 1308037 | 31939.9 |
| magnesium transporter | DW869_05345 | Not Available | Positive | 1308069 - 1309409 | 49694.8 |
| duf349 domain-containing protein | DW869_05350 | Not Available | Positive | 1309670 - 1311478 | 70159.0 |
| Trna-gln | Not Available | Not Available | Positive | 1311633 - 1311703 | Not Available |
| ribosome silencing factor | DW869_05360 | Not Available | Positive | 1312024 - 1312383 | 13409.9 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | DW869_05365 | Not Available | Positive | 1312401 - 1314407 | 74632.1 |
| phosphatidate cytidylyltransferase | DW869_05370 | Not Available | Positive | 1314566 - 1315405 | 30824.3 |
| hypothetical protein | DW869_05375 | Not Available | Negative | 1315397 - 1316131 | 27459.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

