Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy transducer tonb | DW869_05270 | Not Available | Negative | 1290445 - 1291128 | 25649.9 |
| (d)cmp kinase | DW869_05275 | Not Available | Positive | 1291314 - 1292003 | 25660.7 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DW869_05280 | Not Available | Positive | 1291996 - 1292862 | 32600.1 |
| 6-phosphofructokinase | DW869_05285 | Not Available | Positive | 1292944 - 1293924 | 35428.5 |
| methylmalonyl co-a mutase-associated gtpase meab | DW869_05290 | Not Available | Negative | 1294013 - 1295110 | 40361.6 |
| duf1573 domain-containing protein | DW869_05295 | Not Available | Negative | 1295113 - 1296189 | 39188.1 |
| hypothetical protein | DW869_05300 | Not Available | Positive | 1296320 - 1296751 | 17029.8 |
| alpha-2-macroglobulin | DW869_05305 | Not Available | Negative | 1296812 - 1302490 | 213715.0 |
| transcriptional regulator | DW869_05315 | Not Available | Negative | 1302978 - 1303193 | 7860.67 |
| nucleoside deaminase | DW869_05325 | Not Available | Positive | 1304106 - 1304573 | 16967.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

