Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrolipoamide acyltransferase | DW869_05170 | Not Available | Negative | 1274672 - 1275046 | 13047.7 |
| hypothetical protein | DW869_05175 | Not Available | Negative | 1275278 - 1276144 | 33212.5 |
| dna topoisomerase iii | DW869_05180 | Not Available | Positive | 1276418 - 1278559 | 79836.9 |
| rrna cytosine-c5-methyltransferase | DW869_05185 | Not Available | Negative | 1278696 - 1280123 | 53394.1 |
| hypothetical protein | DW869_05190 | Not Available | Positive | 1280255 - 1280962 | 26055.6 |
| sigma-70 family rna polymerase sigma factor | DW869_05195 | Not Available | Positive | 1280965 - 1281513 | 21091.3 |
| duf5056 domain-containing protein | DW869_05200 | Not Available | Positive | 1281497 - 1281826 | 12355.1 |
| thymidylate synthase | DW869_05205 | Not Available | Positive | 1281908 - 1282702 | 30479.3 |
| dihydrofolate reductase | DW869_05210 | Not Available | Positive | 1282786 - 1283280 | 18849.7 |
| asnc family transcriptional regulator | DW869_05215 | Not Available | Negative | 1283284 - 1283760 | 17875.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

