Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium ion-translocating decarboxylase subunit beta | DW869_05050 | Not Available | Negative | 1248180 - 1249415 | 44261.9 |
| oxaloacetate decarboxylase | DW869_05055 | Not Available | Negative | 1249415 - 1251277 | 68971.7 |
| oxaloacetate decarboxylase | DW869_05060 | Not Available | Negative | 1251308 - 1251559 | 8725.21 |
| nitroreductase | DW869_05065 | Not Available | Negative | 1251827 - 1252327 | 18878.7 |
| had family hydrolase | DW869_05070 | Not Available | Positive | 1252390 - 1253043 | 24307.2 |
| 6-phosphofructokinase | DW869_05075 | Not Available | Negative | 1253053 - 1254033 | 35283.2 |
| doxx family protein | DW869_05080 | Not Available | Positive | 1254294 - 1254734 | 16170.6 |
| duf4435 domain-containing protein | DW869_05085 | Not Available | Negative | 1254740 - 1255735 | 39179.5 |
| atp-binding cassette domain-containing protein | DW869_05090 | Not Available | Negative | 1255757 - 1256578 | 31166.5 |
| dmt family transporter | DW869_05095 | Not Available | Positive | 1256661 - 1257587 | 33083.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

