Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_00380 | Not Available | Negative | 105528 - 106607 | 40895.9 |
| s9 family peptidase | DW869_00385 | Not Available | Negative | 106841 - 107878 | 39546.7 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 108162 - 108531 | Not Available |
| ragb/susd family nutrient uptake outer membrane protein | DW869_00390 | Not Available | Negative | 107911 - 109353 | 53773.6 |
| susc/raga family tonb-linked outer membrane protein | DW869_00395 | Not Available | Negative | 109384 - 112680 | 122238.0 |
| duf4974 domain-containing protein | DW869_00400 | Not Available | Negative | 112838 - 113836 | 38187.8 |
| rna polymerase sigma-70 factor | DW869_00405 | Not Available | Negative | 113897 - 114487 | 23553.4 |
| alpha-galactosidase | DW869_00410 | Not Available | Negative | 115383 - 117539 | 82531.2 |
| arac family transcriptional regulator | DW869_00415 | Not Available | Positive | 117727 - 118623 | 34794.4 |
| 9-o-acetylesterase | DW869_00420 | Not Available | Negative | 118636 - 120588 | 72999.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

