Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM38-19
Accession NumberQSHD00000000.1
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Structural protein | DW869_10160 | Not Available | - | 2494679 - 2496094 | 54545.5 |
| Portal protein | DW869_10165 | Not Available | - | 2496112 - 2497500 | 52743.2 |
| Hypothetical protein | DW869_10170 | Not Available | - | 2497502 - 2497927 | 16421.7 |
| Terminase | DW869_10175 | Not Available | - | 2497946 - 2499514 | 60155.2 |
| dde transposase family protein | DW869_10180 | Not Available | - | 2499516 - 2499962 | 16686.0 |
| Capsid maturation protease | DW869_10185 | Not Available | + | 2500159 - 2501196 | 38668.9 |
| hypothetical protein | DW869_10190 | Not Available | + | 2501208 - 2502431 | 44803.2 |
| N-acetylmuramoyl-l-alanine amidase | DW869_10195 | Not Available | + | 2502431 - 2502895 | 17191.3 |
| Hypothetical protein | DW869_10200 | Not Available | + | 2502908 - 2503294 | 13660.9 |
| hypothetical protein | DW869_10205 | Not Available | + | 2503322 - 2503801 | 17543.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
