Holdemanella biformis strain AM42-13AC

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AM42-13AC is a microbial strain isolated from feces of Homo sapiens, indicating its presence in the human gastrointestinal tract. This strain is characterized by having a single replicon, which is a notable trait in microbial genetics as it may suggest a streamlined genomic organization. The presence of Holdemanella biformis in human feces suggests that it may play a role in the gut microbiome, contributing to the complex ecosystem of microorganisms that inhabit the human digestive system. While specific functional roles of this strain are not detailed, members of the genus Holdemanella are generally associated with carbohydrate metabolism and may assist in the breakdown of dietary fibers. The strain is cataloged under the accession number QSGD00000000.1, which provides a reference for researchers interested in studying its genetic and functional properties further. The ecological insight into Holdemanella biformis strain AM42-13AC highlights its potential significance in human health, particularly in relation to gut health and the microbiome's role in digestion and nutrient absorption. Understanding such strains can offer insights into maintaining a balanced gut microbiota, which is crucial for overall well-being.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AM42-13AC

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AM42-13AC AM42-13AC.Scaf145, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2426 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl coa:acetate/3-ketoacid coa transferaseDW907_02095Not AvailablePositive420237 - 42178756055.8
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeDW907_02100Not AvailablePositive421849 - 42288338991.7
serine/threonine protein phosphataseDW907_02105Not AvailableNegative422886 - 42395941688.3
alpha/beta hydrolaseDW907_02110Not AvailableNegative423956 - 42471129022.7
atp-grasp domain-containing proteinDW907_02115Not AvailableNegative424708 - 42590446314.5
nudix hydrolaseDW907_02120Not AvailableNegative425909 - 42642119481.8
n-acetylmuramoyl-l-alanine amidaseDW907_02125Not AvailableNegative426475 - 42717925946.6
chromosome segregation protein scpaDW907_02130Not AvailablePositive427270 - 42800128825.0
smc-scp complex subunit scpbDW907_02135Not AvailablePositive427977 - 42854921845.4
rrna pseudouridine synthaseDW907_02140Not AvailablePositive428553 - 42928127949.2

Displaying genes 471 – 480 of 2515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.