Holdemanella biformis strain AM42-13AC

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemanella

Description

Holdemanella biformis strain AM42-13AC is a microbial strain isolated from feces of Homo sapiens, indicating its presence in the human gastrointestinal tract. This strain is characterized by having a single replicon, which is a notable trait in microbial genetics as it may suggest a streamlined genomic organization. The presence of Holdemanella biformis in human feces suggests that it may play a role in the gut microbiome, contributing to the complex ecosystem of microorganisms that inhabit the human digestive system. While specific functional roles of this strain are not detailed, members of the genus Holdemanella are generally associated with carbohydrate metabolism and may assist in the breakdown of dietary fibers. The strain is cataloged under the accession number QSGD00000000.1, which provides a reference for researchers interested in studying its genetic and functional properties further. The ecological insight into Holdemanella biformis strain AM42-13AC highlights its potential significance in human health, particularly in relation to gut health and the microbiome's role in digestion and nutrient absorption. Understanding such strains can offer insights into maintaining a balanced gut microbiota, which is crucial for overall well-being.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemanella
SpeciesHoldemanella biformis
Strainstrain AM42-13AC

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemanella biformis strain AM42-13AC AM42-13AC.Scaf145, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2426 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xre family transcriptional regulatorDW907_12650Not AvailableNegative2496442 - 249766248578.5
mfs transporterDW907_12655Not AvailablePositive2498156 - 249873121939.2
sugar phosphate isomerase/epimeraseDW907_12660Not AvailablePositive2498735 - 24988705097.76
gntr family transcriptional regulatorDW907_12665Not AvailablePositive2498907 - 249961727674.2
gntr family transcriptional regulatorDW907_12670Not AvailablePositive2499620 - 250034227987.4
sis domain-containing proteinDW907_12675Not AvailablePositive2500361 - 250143140631.4
type ii crispr rna-guided endonuclease cas9DW907_12685Not AvailableNegative2502309 - 2505650129434.0
atp-binding cassette domain-containing proteinDW907_12690Not AvailableNegative2505712 - 250606913626.4
hypothetical proteinDW907_12695Not AvailableNegative2506613 - 250741330869.9
hypothetical proteinDW907_12700Not AvailablePositive2508570 - 250888711949.3

Displaying genes 2461 – 2470 of 2515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.