Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola coprophilus strain AM42-38
Accession NumberQSFT00000000.1
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glutamate racemase | DW921_01785 | Not Available | - | 377415 - 378257 | 31347.8 |
| omph family outer membrane protein | DW921_01790 | Not Available | - | 378386 - 378946 | 21205.4 |
| omph family outer membrane protein | DW921_01795 | Not Available | - | 379007 - 379522 | 18920.0 |
| outer membrane protein assembly factor bama | DW921_01800 | Not Available | - | 379651 - 382299 | 101603.0 |
| isoprenyl transferase | DW921_01805 | Not Available | - | 382308 - 383039 | 27930.3 |
| hypothetical protein | DW921_01810 | Not Available | - | 383064 - 384491 | 52398.8 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DW921_01815 | Not Available | - | 384618 - 385667 | 39137.4 |
| peptide chain release factor n(5)-glutamine methyltransferase | DW921_01820 | Not Available | + | 385703 - 386542 | 31609.7 |
| recx family transcriptional regulator | DW921_01825 | Not Available | + | 386539 - 387036 | 19221.0 |
| comf family protein | DW921_01830 | Not Available | + | 387020 - 387718 | 25938.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
