Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola coprophilus strain AM42-38
Accession NumberQSFT00000000.1
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoglycerate dehydrogenase | DW921_00780 | Not Available | - | 144936 - 145859 | 33478.2 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | DW921_00785 | Not Available | - | 145966 - 147036 | 39657.9 |
| atp-dependent helicase | DW921_00790 | Not Available | - | 147291 - 148607 | 49506.4 |
| pyridoxamine kinase | DW921_00795 | Not Available | + | 148744 - 149739 | 37687.5 |
| 4-amino-4-deoxychorismate lyase | DW921_00800 | Not Available | - | 149714 - 150319 | 23755.6 |
| aminodeoxychorismate synthase component i | DW921_00805 | Not Available | - | 150303 - 151298 | 37689.9 |
| duf454 domain-containing protein | DW921_00810 | Not Available | - | 151291 - 151659 | 13986.7 |
| duf2023 family protein | DW921_00815 | Not Available | - | 151763 - 152131 | 14470.0 |
| flavodoxin flda | DW921_00820 | Not Available | - | 152128 - 152634 | 17931.0 |
| metallophosphoesterase | DW921_00825 | Not Available | + | 152889 - 153635 | 28624.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
