Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialate o-acetylesterase | DW935_04375 | Not Available | Negative | 1057365 - 1059428 | 77650.2 |
| sialate o-acetylesterase | DW935_04380 | Not Available | Negative | 1059425 - 1060090 | 25131.8 |
| beta-n-acetylhexosaminidase | DW935_04385 | Not Available | Negative | 1060092 - 1062098 | 77047.3 |
| sialidase | DW935_04390 | Not Available | Negative | 1062102 - 1063742 | 60315.2 |
| susd family outer membrane lipoprotein nanu | DW935_04395 | Not Available | Negative | 1063875 - 1065377 | 56944.4 |
| tonb-dependent receptor | DW935_04400 | Not Available | Negative | 1065397 - 1068672 | 121669.0 |
| Trna-arg | Not Available | Not Available | Positive | 1068981 - 1069055 | Not Available |
| aspartate--ammonia ligase | DW935_04410 | Not Available | Positive | 1069258 - 1070298 | 39770.2 |
| uracil-dna glycosylase | DW935_04415 | Not Available | Positive | 1070416 - 1071078 | 24957.5 |
| lps-assembly protein lptd | DW935_04420 | Not Available | Negative | 1071168 - 1073903 | 103895.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

