Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DW935_04225 | Not Available | Negative | 1015930 - 1016565 | 24920.2 |
| rok family transcriptional regulator | DW935_04230 | Not Available | Negative | 1016680 - 1017885 | 44586.1 |
| n-acetylneuraminate lyase | DW935_04235 | Not Available | Positive | 1018191 - 1019105 | 33910.9 |
| n-acylglucosamine 2-epimerase | DW935_04240 | Not Available | Positive | 1019118 - 1020314 | 46212.1 |
| mfs transporter | DW935_04245 | Not Available | Positive | 1020333 - 1021568 | 44685.5 |
| glucosamine-6-phosphate deaminase | DW935_04250 | Not Available | Positive | 1021614 - 1022405 | 29021.6 |
| glucosamine-6-phosphate deaminase | DW935_04255 | Not Available | Positive | 1022409 - 1024397 | 74771.3 |
| tigr02757 family protein | DW935_04260 | Not Available | Negative | 1024573 - 1025337 | 29921.8 |
| arac family transcriptional regulator | DW935_04265 | Not Available | Negative | 1025403 - 1026281 | 34389.8 |
| efflux rnd transporter periplasmic adaptor subunit | DW935_04270 | Not Available | Positive | 1026458 - 1027525 | 39261.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

