Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i asparaginase | DW935_04125 | Not Available | Positive | 990278 - 991321 | 38739.7 |
| dna-binding response regulator | DW935_04130 | Not Available | Positive | 991518 - 992207 | 26203.9 |
| two-component sensor histidine kinase | DW935_04135 | Not Available | Positive | 992226 - 994007 | 68725.6 |
| siderophore biosynthesis protein | DW935_04140 | Not Available | Negative | 994478 - 995104 | 24533.4 |
| gliding motility-associated protein glde | DW935_04145 | Not Available | Negative | 995113 - 996465 | 50819.5 |
| single-stranded dna-binding protein | DW935_04150 | Not Available | Negative | 996502 - 996969 | 17305.4 |
| a/g-specific adenine glycosylase | DW935_04155 | Not Available | Negative | 996984 - 998042 | 40626.7 |
| integration host factor subunit beta | DW935_04160 | Not Available | Positive | 998222 - 998497 | 10172.4 |
| ribonuclease e/g | DW935_04165 | Not Available | Positive | 998736 - 1000310 | 59689.8 |
| n-acetylmuramoyl-l-alanine amidase | DW935_04170 | Not Available | Negative | 1000482 - 1001288 | 30760.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

