Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_03970 | Not Available | Positive | 952686 - 953924 | 47660.4 |
| duf3869 domain-containing protein | DW935_03975 | Not Available | Positive | 953935 - 954783 | 30452.5 |
| ompa family protein | DW935_03980 | Not Available | Positive | 954827 - 955921 | 39293.2 |
| glycoside hydrolase xylanase | DW935_03985 | Not Available | Negative | 956254 - 957213 | 35516.7 |
| spor domain-containing protein | DW935_03990 | Not Available | Negative | 957339 - 957836 | 17961.2 |
| ytxh domain-containing protein | DW935_03995 | Not Available | Positive | 958047 - 958244 | 6773.24 |
| phage holin family protein | DW935_04000 | Not Available | Positive | 958322 - 958678 | 13343.2 |
| hypothetical protein | DW935_04005 | Not Available | Positive | 958681 - 958947 | 10057.5 |
| peptidase s41 | DW935_04010 | Not Available | Positive | 958977 - 962237 | 122940.0 |
| d-xylose transporter xyle | DW935_04020 | Not Available | Negative | 963416 - 964855 | 52744.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

