Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_03920 | Not Available | Positive | 943433 - 943618 | 7166.81 |
| endolytic transglycosylase mltg | DW935_03925 | Not Available | Positive | 943620 - 944654 | 39576.9 |
| 4fe-4s ferredoxin | DW935_03930 | Not Available | Negative | 944693 - 945472 | 29079.2 |
| 50s ribosomal protein l20 | DW935_03935 | Not Available | Negative | 945937 - 946287 | 13181.3 |
| 50s ribosomal protein l35 | DW935_03940 | Not Available | Negative | 946399 - 946596 | 7367.31 |
| translation initiation factor if-3 | DW935_03945 | Not Available | Negative | 946667 - 947263 | 22643.4 |
| threonine--trna ligase | DW935_03950 | Not Available | Negative | 947379 - 949319 | 74217.2 |
| tetratricopeptide repeat protein | DW935_03955 | Not Available | Negative | 949400 - 951409 | 77306.4 |
| peptide deformylase | DW935_03960 | Not Available | Negative | 951482 - 952036 | 21050.7 |
| holliday junction resolvase ruvx | DW935_03965 | Not Available | Negative | 952060 - 952479 | 15859.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

