Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DW935_03440 | Not Available | Positive | 831895 - 832485 | 23832.7 |
| fecr family protein | DW935_03445 | Not Available | Positive | 832540 - 833475 | 36575.9 |
| susc/raga family tonb-linked outer membrane protein | DW935_03450 | Not Available | Positive | 833628 - 836981 | 124318.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_03455 | Not Available | Positive | 836995 - 838536 | 59412.4 |
| duf4982 domain-containing protein | DW935_03460 | Not Available | Positive | 838635 - 841082 | 92761.4 |
| glycoside hydrolase | DW935_03465 | Not Available | Positive | 841079 - 843160 | 80566.9 |
| glycoside hydrolase family 2 protein | DW935_03470 | Not Available | Positive | 843223 - 845901 | 101354.0 |
| arylsulfatase | DW935_03475 | Not Available | Positive | 846016 - 847614 | 60943.1 |
| duf1566 domain-containing protein | DW935_03480 | Not Available | Positive | 847896 - 849446 | 54947.7 |
| hypothetical protein | DW935_03485 | Not Available | Negative | 849479 - 849688 | 7854.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

