Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | DW935_03390 | Not Available | Positive | 820991 - 821836 | 31477.6 |
| insulinase family protein | DW935_03395 | Not Available | Positive | 821849 - 823093 | 47363.6 |
| mate family efflux transporter | DW935_03400 | Not Available | Positive | 823187 - 824497 | 48593.3 |
| hybrid sensor histidine kinase/response regulator | DW935_03405 | Not Available | Positive | 824511 - 827078 | 96900.3 |
| sigma-54-dependent fis family transcriptional regulator | DW935_03410 | Not Available | Positive | 827180 - 828562 | 51219.5 |
| hypothetical protein | DW935_03415 | Not Available | Positive | 828847 - 829152 | 10782.8 |
| rna pseudouridine synthase | DW935_03420 | Not Available | Negative | 829217 - 829888 | 25505.8 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DW935_03425 | Not Available | Negative | 829890 - 830636 | 25964.4 |
| tetr/acrr family transcriptional regulator | DW935_03430 | Not Available | Negative | 830668 - 831267 | 22662.3 |
| Trna-met | Not Available | Not Available | Positive | 831499 - 831574 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

