Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster domain-containing protein | DW935_03285 | Not Available | Positive | 788247 - 789713 | 54223.4 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DW935_03290 | Not Available | Positive | 789722 - 790756 | 38844.7 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DW935_03295 | Not Available | Positive | 790769 - 792187 | 53333.0 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DW935_03300 | Not Available | Positive | 792251 - 793441 | 43910.6 |
| histidine--trna ligase | DW935_03305 | Not Available | Negative | 794021 - 795385 | 50299.7 |
| sugar abc transporter substrate-binding protein | DW935_03310 | Not Available | Negative | 795544 - 796392 | 31291.0 |
| multidrug dmt transporter permease | DW935_03315 | Not Available | Negative | 796400 - 797416 | 35979.8 |
| fucose isomerase | DW935_03320 | Not Available | Negative | 797429 - 798853 | 52346.9 |
| glycerol kinase glpk | DW935_03325 | Not Available | Negative | 798887 - 800383 | 55221.4 |
| transketolase family protein | DW935_03330 | Not Available | Negative | 800409 - 801347 | 33625.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

