Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DW935_03025 | Not Available | Negative | 717950 - 720019 | 78010.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_03030 | Not Available | Negative | 720051 - 721586 | 58902.3 |
| susc/raga family tonb-linked outer membrane protein | DW935_03035 | Not Available | Negative | 721607 - 725023 | 126367.0 |
| duf4974 domain-containing protein | DW935_03040 | Not Available | Negative | 725168 - 726154 | 38650.5 |
| rna polymerase sigma-70 factor | DW935_03045 | Not Available | Negative | 726284 - 726865 | 22694.6 |
| abc transporter atp-binding protein | DW935_03050 | Not Available | Negative | 726905 - 728539 | 61961.7 |
| putative transporter | DW935_03055 | Not Available | Negative | 728655 - 730325 | 60144.9 |
| methylmalonyl-coa mutase small subunit | DW935_03060 | Not Available | Positive | 730611 - 732521 | 70522.5 |
| methylmalonyl-coa mutase | DW935_03065 | Not Available | Positive | 732531 - 734681 | 79111.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_03070 | Not Available | Negative | 735004 - 736494 | 55874.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

