Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase c39 | DW935_02975 | Not Available | Positive | 703340 - 703921 | 23420.5 |
| hypothetical protein | DW935_02980 | Not Available | Negative | 703887 - 704510 | 23177.9 |
| hypothetical protein | DW935_02985 | Not Available | Positive | 704823 - 705044 | 8449.06 |
| hypothetical protein | DW935_02990 | Not Available | Positive | 705041 - 705262 | 8538.35 |
| rna degradosome polyphosphate kinase | DW935_02995 | Not Available | Negative | 705288 - 707342 | 80560.6 |
| metallophosphoesterase | DW935_03000 | Not Available | Positive | 707400 - 707897 | 18707.5 |
| dtdp-glucose 4,6-dehydratase | DW935_03005 | Not Available | Positive | 707946 - 709085 | 43738.0 |
| tonb-dependent receptor | DW935_03010 | Not Available | Positive | 709555 - 712647 | 115070.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_03015 | Not Available | Positive | 712660 - 714477 | 68245.8 |
| duf4981 domain-containing protein | DW935_03020 | Not Available | Negative | 714664 - 717894 | 122544.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

