Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosome-binding factor rbfa | DW935_02560 | Not Available | Positive | 609216 - 609551 | 12972.9 |
| abc transporter permease | DW935_02565 | Not Available | Positive | 609561 - 610799 | 45679.9 |
| pyridoxamine kinase | DW935_02570 | Not Available | Negative | 611186 - 612058 | 32693.3 |
| glutamate racemase | DW935_02575 | Not Available | Negative | 612115 - 612960 | 31392.0 |
| omph family outer membrane protein | DW935_02580 | Not Available | Negative | 613063 - 613566 | 19260.2 |
| omph family outer membrane protein | DW935_02585 | Not Available | Negative | 613624 - 614139 | 18937.6 |
| outer membrane protein assembly factor bama | DW935_02590 | Not Available | Negative | 614160 - 616802 | 100717.0 |
| isoprenyl transferase | DW935_02595 | Not Available | Negative | 616814 - 617545 | 28066.4 |
| hypothetical protein | DW935_02600 | Not Available | Negative | 617579 - 618976 | 52262.0 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DW935_02605 | Not Available | Negative | 619104 - 620156 | 39674.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

