Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW935_02310 | Not Available | Negative | 543243 - 546572 | 125950.0 |
| hu family dna-binding protein | DW935_02315 | Not Available | Negative | 546665 - 546937 | 9278.25 |
| rhomboid family intramembrane serine protease | DW935_02320 | Not Available | Positive | 547148 - 547825 | 25332.5 |
| rhomboid family intramembrane serine protease | DW935_02325 | Not Available | Positive | 547806 - 548699 | 33974.6 |
| endonuclease | DW935_02330 | Not Available | Positive | 548703 - 549782 | 40291.9 |
| m3 family peptidase | DW935_02335 | Not Available | Positive | 549809 - 551896 | 79002.5 |
| protein translocase subunit secdf | DW935_02340 | Not Available | Positive | 552075 - 555062 | 109234.0 |
| sugar kinase | DW935_02345 | Not Available | Negative | 555327 - 556391 | 38958.5 |
| nad-dependent epimerase/dehydratase family protein | DW935_02350 | Not Available | Negative | 556534 - 557487 | 35269.3 |
| glycine c-acetyltransferase | DW935_02355 | Not Available | Positive | 557658 - 558848 | 43568.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

