Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW935_02260 | Not Available | Negative | 521712 - 523490 | 64403.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_02265 | Not Available | Negative | 523515 - 525266 | 66225.7 |
| tonb-dependent receptor | DW935_02270 | Not Available | Negative | 525286 - 528495 | 118845.0 |
| glycoside hydrolase family 97 protein | DW935_02275 | Not Available | Negative | 528935 - 530863 | 72923.5 |
| response regulator | DW935_02280 | Not Available | Negative | 530996 - 535222 | 161486.0 |
| arabinan endo-1,5-alpha-l-arabinosidase | DW935_02285 | Not Available | Positive | 535492 - 537027 | 57656.1 |
| alpha-l-arabinofuranosidase | DW935_02290 | Not Available | Positive | 537051 - 539030 | 75396.2 |
| arylsulfatase | DW935_02295 | Not Available | Negative | 539833 - 541395 | 57663.3 |
| trna 2-thiouridine(34) synthase mnma | DW935_02300 | Not Available | Negative | 541543 - 542598 | 40157.7 |
| dna-binding protein | DW935_02305 | Not Available | Negative | 542601 - 543071 | 18238.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

