Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 36 | DW935_02010 | Not Available | Negative | 454177 - 456252 | 78471.8 |
| glycoside hydrolase family 29 | DW935_02015 | Not Available | Negative | 456259 - 457644 | 52612.5 |
| duf229 domain-containing protein | DW935_02020 | Not Available | Negative | 457648 - 459084 | 55234.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW935_02025 | Not Available | Negative | 459186 - 461099 | 73430.1 |
| tonb-dependent receptor | DW935_02030 | Not Available | Negative | 461120 - 464374 | 121209.0 |
| hybrid sensor histidine kinase/response regulator | DW935_02035 | Not Available | Positive | 464559 - 468632 | 154765.0 |
| 6-phosphofructokinase | DW935_02040 | Not Available | Negative | 468642 - 469652 | 35787.3 |
| hypothetical protein | DW935_02045 | Not Available | Positive | 469800 - 471305 | 57457.0 |
| hypothetical protein | DW935_02050 | Not Available | Positive | 471310 - 473232 | 73414.4 |
| duf3108 domain-containing protein | DW935_02055 | Not Available | Positive | 473229 - 474038 | 31356.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

