Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein tram | DW935_21830 | Not Available | Positive | 5032680 - 5033461 | 29204.8 |
| conjugative transposon protein tram | DW935_21835 | Not Available | Positive | 5033725 - 5033957 | 7980.61 |
| 3-isopropylmalate dehydrogenase | DW935_21845 | Not Available | Negative | 5034323 - 5035384 | 39089.9 |
| 2-isopropylmalate synthase | DW935_21850 | Not Available | Negative | 5035478 - 5036998 | 56824.1 |
| 3-isopropylmalate dehydratase small subunit | DW935_21855 | Not Available | Negative | 5037004 - 5037600 | 22479.6 |
| 3-isopropylmalate dehydratase large subunit | DW935_21860 | Not Available | Negative | 5037614 - 5038996 | 50049.1 |
| 2-isopropylmalate synthase | DW935_21865 | Not Available | Negative | 5039014 - 5040510 | 54450.0 |
| hypothetical protein | DW935_21870 | Not Available | Positive | 5041203 - 5044502 | 122574.0 |
| hypothetical protein | DW935_21875 | Not Available | Positive | 5044578 - 5044925 | 13604.0 |
| hypothetical protein | DW935_21880 | Not Available | Negative | 5045056 - 5047677 | 94819.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

