Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW935_21550 | Not Available | Positive | 4973647 - 4974930 | 50311.2 |
| duf1016 family protein | DW935_21555 | Not Available | Positive | 4974994 - 4976283 | 49137.8 |
| hypothetical protein | DW935_21560 | Not Available | Positive | 4976293 - 4977357 | 41983.9 |
| duf3853 family protein | DW935_21565 | Not Available | Positive | 4977579 - 4977887 | 11297.9 |
| mobilization protein | DW935_21570 | Not Available | Positive | 4977899 - 4978966 | 40533.7 |
| mobilization protein | DW935_21580 | Not Available | Positive | 4980391 - 4981794 | 54763.7 |
| steroid delta-isomerase | DW935_21585 | Not Available | Positive | 4981883 - 4982236 | 13706.5 |
| lincosamide nucleotidyltransferase lnu(an2) | DW935_21590 | Not Available | Negative | 4982684 - 4983196 | 19690.2 |
| macrolide efflux mfs transporter mef(en2) | DW935_21595 | Not Available | Negative | 4983221 - 4984426 | 44135.4 |
| hypothetical protein | DW935_21600 | Not Available | Positive | 4984762 - 4985972 | 44288.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

