Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM43-4BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1506264 bp
Thymine Count
1483148 bp
Guanine Count
1054015 bp
Cytosine Count
1111250 bp
Genome Length
5155765 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| terminase small subunit | DW935_21490 | Not Available | Positive | 4956757 - 4957254 | 18687.6 |
| pbsx family phage terminase large subunit | DW935_21495 | Not Available | Positive | 4957251 - 4959260 | 77728.1 |
| low specificity l-threonine aldolase | DW935_21510 | Not Available | Negative | 4962046 - 4963062 | 37852.4 |
| tonb-dependent receptor | DW935_21515 | Not Available | Positive | 4963228 - 4965993 | 104480.0 |
| hypothetical protein | DW935_21520 | Not Available | Positive | 4966030 - 4967607 | 56712.6 |
| mannose-6-phosphate isomerase | DW935_21525 | Not Available | Positive | 4967721 - 4968692 | 36199.5 |
| lactonase family protein | DW935_21530 | Not Available | Negative | 4968784 - 4969950 | 42688.8 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | Positive | 4970091 - 4970485 | Not Available |
| alpha-l-fucosidase | DW935_21540 | Not Available | Negative | 4970666 - 4971991 | 50388.9 |
| gtp-binding protein | DW935_21545 | Not Available | Positive | 4972140 - 4973363 | 46537.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

